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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52921728_52922117_F

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52921728 - 52922117
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCTTCTCTGACT
Flanking Amino Acid:
NAEKVLLTTQGIDMISKMLK
Intron Amino Acid Position:
4499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
60.7
0.42
1.7
76.55
40.2

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641