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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52923196_52923986_F

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52923196 - 52923986
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTAATTTCAACC
Flanking Amino Acid:
LRTLINELVKGILPRSWSHY
Intron Amino Acid Position:
4621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70.5
0.46
0.8
65.5
35.3
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
57.8
0.22
1.5
67.9
37.4

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641