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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52924703_52925136_F

Intron Information:

Intron Rank:
76
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
52924703 - 52925136
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTA
5'SS Class:
weak_major
3'SS Sequence:
ATTTCAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAATT
Flanking Amino Acid:
VLDACSFGVTGLKLQGATCS
Intron Amino Acid Position:
4725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
75
38.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.3
0.64
0.9
70.9
38.2
Minor 5ss
60.4
0.35
2.4
73.5
43.2
Minor BPS
56.8
0.29
1.5
73.18
38

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641