About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52927559_52927656_R

Intron Information:

Intron Rank:
148388
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
52927559 - 52927656
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACTCATT
5'SS Class:
weak_major
3'SS Sequence:
AATATCCAAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGACTCTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.2
65.7
45.6
Major BPS
69.8
0.49
1
61
37.5
Major PPT
59.2
0.21
1.1
52.7
40.9
Minor 5ss
43.9
-0.7
3.2
57.8
46.6
Minor BPS
50.6
-0
1.5
60.07
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027210
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035465
52927548 - 52930418
2871