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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52929806_52930263_R

Intron Information:

Intron Rank:
148387
Intron Class:
major
Intron Phase:
Intron Coordinates:
52929806 - 52930263
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTTTCTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
74.6
35.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
76.1
0.59
1
75.9
38
Minor 5ss
32.7
-2
3.1
43.8
43.9
Minor BPS
71.8
0.66
1.5
80.19
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027210
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035465
52927548 - 52930418
2871
ENSAPLT00000032622
52927246 - 52930418
3173