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Intron Name: Anas_platyrhynchos_platyrhynchos_5_5295318_5320688_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5295318 - 5320688

Intron Length:

25371

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTGGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

TATTGCTTCACA

Flanking Amino Acid:

IWKDIEYVTNDNVDLGDLMF

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.5

28.5

Major BPS

84.7

0.86

74.3

40.7

Major PPT

68.1

0.41

1.1

64.8

40.2

Minor 5ss

40.8

-1

2.8

57.5

39.6

Minor BPS

0.31

2.2

76.39

40.8

Associated Gene:

Gene:

SYT9

Ensembl Gene ID:

ENSAPLG00000006733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022743

5290961 - 5324554

33594

ENSAPLT00000006995

5288605 - 5324554

35950