About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52996222_53000132_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52996222 - 53000132
Intron Length:
3911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
KETSKLFNEERLIDKSRVTC
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.4
0.84
0.7
83.5
31.6
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
WDR20
Ensembl Gene ID:
ENSAPLG00000013384
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013935
52968688 - 53012919
44232