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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53013754_53018492_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
53013754 - 53018492
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
GATATAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GTTGATATAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
65.2
0.34
1
60.5
44.5
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
49
0
1.9
70.41
40.8

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025500
53013523 - 53035916
22394
ENSAPLT00000018737
53013523 - 53032901
19379