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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53014906_53018546_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53014906 - 53018546
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTACTGAC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
AAGTCATTAGCA
Flanking Amino Acid:
HLPAIGRRGGESFFFLVWKK
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
67.9
37.7
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
83.1
0.74
0.7
77
31.7
Minor 5ss
34.9
-1.7
3
44.2
43.6
Minor BPS
53.8
0.12
1.9
64.67
41.1

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027239
53014862 - 53032901
18040