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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53018620_53018705_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53018620 - 53018705
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGACT
5'SS Class:
major
3'SS Sequence:
GTTTTCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTTTCTCAACA
Flanking Amino Acid:
SVRFMGSNIESGKQKARKSS
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.1
38.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.5
0.64
0.9
74.2
35.4
Minor 5ss
40.3
-1.1
3.2
58.1
46.3
Minor BPS
72.3
0.69
1.5
80.34
35.1

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018737
53013523 - 53032901
19379
ENSAPLT00000013775
53018539 - 53033710
15172
ENSAPLT00000027239
53014862 - 53032901
18040
ENSAPLT00000025500
53013523 - 53035916
22394