About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53020419_53020831_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53020419 - 53020831
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAACT
Flanking Amino Acid:
PAKKTLNKFKQSTIMNFDFP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.5
0.55
1
70
39.4
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
67
0.61
1.6
79.52
42.8

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018737
53013523 - 53032901
19379
ENSAPLT00000013775
53018539 - 53033710
15172
ENSAPLT00000027239
53014862 - 53032901
18040
ENSAPLT00000025500
53013523 - 53035916
22394