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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53024448_53024944_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53024448 - 53024944
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TATATTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCTCTGATCT
Flanking Amino Acid:
QLCQSLDHIHRNGIFHRDVK
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.6
0.37
1.1
60.8
44.4
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
54.2
0.21
1.7
73.9
42.8

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027239
53014862 - 53032901
18040
ENSAPLT00000025500
53013523 - 53035916
22394
ENSAPLT00000018737
53013523 - 53032901
19379
ENSAPLT00000013775
53018539 - 53033710
15172
ENSAPLT00000043810
53013590 - 53035916
22327