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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53025024_53028401_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53025024 - 53028401
Intron Length:
3378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AATTTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGAAATTTAATT
Flanking Amino Acid:
MDMNIYELIKGRRKPLPEKK
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.3
0.46
1
60.9
44
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
58.3
0.34
1.5
71.55
39.2

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025500
53013523 - 53035916
22394
ENSAPLT00000018737
53013523 - 53032901
19379
ENSAPLT00000013775
53018539 - 53033710
15172
ENSAPLT00000043810
53013590 - 53035916
22327
ENSAPLT00000027239
53014862 - 53032901
18040