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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53028473_53029851_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53028473 - 53029851
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGTCTCCTAATT
Flanking Amino Acid:
PNILMLHEVVFDKKAGSLSL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
56.6
0.29
1.7
73.33
37.2

Associated Gene:

Gene:
MOK
Ensembl Gene ID:
ENSAPLG00000013215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025500
53013523 - 53035916
22394
ENSAPLT00000018737
53013523 - 53032901
19379
ENSAPLT00000013775
53018539 - 53033710
15172
ENSAPLT00000043810
53013590 - 53035916
22327
ENSAPLT00000027239
53014862 - 53032901
18040