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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53042803_53043171_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53042803 - 53043171
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
VTVYEFLLMKVEKGYPAKAY
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
80.9
28.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.7
0.78
0.7
77.8
35.6
Minor 5ss
34.9
-1.7
3.4
46.2
49.1
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
ZNF839
Ensembl Gene ID:
ENSAPLG00000013003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013544
53037268 - 53048660
11393