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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53045007_53045786_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53045007 - 53045786
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTTGTATTGACA
Flanking Amino Acid:
EILGQKRLAESSGEELLPSA
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.4
33.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
73.2
0.52
1
68.7
41.2
Minor 5ss
40
-1.1
3.2
56.4
48
Minor BPS
53.4
0.1
1.8
66.63
40.1

Associated Gene:

Gene:
ZNF839
Ensembl Gene ID:
ENSAPLG00000013003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013544
53037268 - 53048660
11393