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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53052839_53054332_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53052839 - 53054332
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTATTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTCTATTCATT
Flanking Amino Acid:
LFHTWPTPYFYEVSLKLSEM
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.9
0.7
0.9
78.1
34.7
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
51.6
0.13
2
78.06
38.5

Associated Gene:

Gene:
CINP
Ensembl Gene ID:
ENSAPLG00000012968
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013505
53052636 - 53057442
4807