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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53054463_53056044_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53054463 - 53056044
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATACTA
5'SS Class:
major
3'SS Sequence:
TCATCGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTAGCA
Flanking Amino Acid:
AELLETLKHMTKIQLKMEKL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
66.3
39
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.7
0.67
0.9
76.6
37.2
Minor 5ss
35.8
-1.6
3.2
45.3
43.6
Minor BPS
65
0.47
1.8
78.39
37.6

Associated Gene:

Gene:
CINP
Ensembl Gene ID:
ENSAPLG00000012968
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013505
53052636 - 53057442
4807