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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53063836_53064224_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53063836 - 53064224
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTTCCCTTCATT
Flanking Amino Acid:
VSSLPGRNKQLRRFDVAGIH
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
81.7
0.71
0.9
76.1
37.6
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
65.2
0.56
1.8
81.08
41.1

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519