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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53065480_53066603_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53065480 - 53066603
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAACCCTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTGCATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCTTCTTTAAAA
Flanking Amino Acid:
VKQVGTQPRKNSGKFGACFI
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
60.8
44.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81
0.7
0.8
78.8
34.4
Minor 5ss
49.7
-0
2.8
68.7
35.9
Minor BPS
70.5
0.64
1.4
73.23
38.5

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519