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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53067531_53068916_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53067531 - 53068916
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTTTGGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATACTTTTATT
Flanking Amino Acid:
SSRPEGLSSIVSDVNSKVLN
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.9
0.63
1
80.2
37.3
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
61.3
0.44
1.6
77.57
39.2

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519