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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53074314_53076514_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53074314 - 53076514
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTCTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
RTNGDLYLQTGLSVDRPCAR
Intron Amino Acid Position:
973

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78
0.63
0.9
70
40.5
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519