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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53076696_53078177_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53076696 - 53078177
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TTTACATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGCTTTTTAATT
Flanking Amino Acid:
EGEQWKSDIVSEMQALEPVC
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.8
0.65
0.8
70.6
40
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
66.2
0.59
1.2
72.44
39.2

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519