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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53079867_53080762_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53079867 - 53080762
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGTGTG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTAACTTTCATA
Flanking Amino Acid:
EFHVAKGNLIGTYWNNIVPR
Intron Amino Acid Position:
1161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
68.2
42.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
31.3
-2.1
3.3
40.4
45.9
Minor BPS
56
0.18
1.8
68.58
38.2

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519