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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53085614_53097855_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53085614 - 53097855
Intron Length:
12242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CTGTGCTTAATT
Flanking Amino Acid:
AWIMIEPPIQPVGVNLVSIH
Intron Amino Acid Position:
1319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
85.5
0.8
0.8
80.1
37.1
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
66.4
0.59
1.8
79.19
43.7

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519