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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53097998_53099206_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53097998 - 53099206
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
CAATTATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTCCAATTATCT
Flanking Amino Acid:
PVGTDWEHVPGLQACQLAIS
Intron Amino Acid Position:
1366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
70.3
0.46
0.9
67.2
38.8
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
45.9
-0.2
2
64.81
44.7

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519