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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53099357_53099644_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53099357 - 53099644
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTATGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CCTTCGTTAAAA
Flanking Amino Acid:
KIPGNVSRLTVTPLDELWAI
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.8
73.8
42.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83
0.74
0.9
77.2
36.8
Minor 5ss
29.3
-2.4
3.8
40.6
45.6
Minor BPS
55.6
0.17
2.2
68.09
44.4

Associated Gene:

Gene:
TECPR2
Ensembl Gene ID:
ENSAPLG00000012414
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012964
53063284 - 53100802
37519