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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53225098_53229040_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53225098 - 53229040

Intron Length:

3943

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAATC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

GTGATTACAGTT

Flanking Amino Acid:

KEKHGYNMEQALGMLFWHKH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

1.1

35.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

80.6

0.69

0.9

73.5

41.9

Minor 5ss

43.6

-0.7

2.9

43.6

Minor BPS

38.1

-0.8

1.7

50.06

37.9

Associated Gene:

Gene:

RCOR1

Ensembl Gene ID:

ENSAPLG00000012214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042431

53223831 - 53245006

21176

ENSAPLT00000012726

53208145 - 53245063

36919