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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53229203_53231875_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53229203 - 53231875

Intron Length:

2673

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

GTTTAATTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

ACATGTTTAATT

Flanking Amino Acid:

GKTFHRIQQMLPDKSIASLV

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

77.9

36.8

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

80.6

0.69

0.9

73.3

40.8

Minor 5ss

34.5

-1.8

3.3

46.4

44.2

Minor BPS

58.3

0.34

1.7

70.49

41.3

Associated Gene:

Gene:

RCOR1

Ensembl Gene ID:

ENSAPLG00000012214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042431

53223831 - 53245006

21176

ENSAPLT00000012726

53208145 - 53245063

36919