Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53240086_53241080_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53240086 - 53241080

Intron Length:

995

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGATG

5'SS Class:

strong_major

3'SS Sequence:

ACTTCCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TCCTTGTTAAAA

Flanking Amino Acid:

DMELVSIKRQIQNIKQTNSA

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

75.1

40.7

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

84.1

0.77

0.8

81.1

30.1

Minor 5ss

-0.9

3.1

56.4

Minor BPS

49.9

-0

2.1

63.42

43.3

Associated Gene:

Gene:

RCOR1

Ensembl Gene ID:

ENSAPLG00000012214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042431

53223831 - 53245006

21176

ENSAPLT00000012726

53208145 - 53245063

36919