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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53241159_53241879_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53241159 - 53241879

Intron Length:

721

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGATCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGACCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTTTCTGACCT

Flanking Amino Acid:

GGIEQYRLPEVVQKFNARWT

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.4

35.1

Major BPS

84.4

0.85

34.5

Major PPT

77.3

0.61

0.9

70.4

35.2

Minor 5ss

36.8

-1.5

3.3

48.1

47.6

Minor BPS

67.7

0.63

1.7

88.41

36.6

Associated Gene:

Gene:

RCOR1

Ensembl Gene ID:

ENSAPLG00000012214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042431

53223831 - 53245006

21176

ENSAPLT00000012726

53208145 - 53245063

36919