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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53241938_53242476_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53241938 - 53242476

Intron Length:

539

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGCTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TAACACTTTACT

Flanking Amino Acid:

TTDEQLLAVQAIRKYGRDFQ

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

65.7

40.1

Major BPS

61.3

0.28

30.6

Major PPT

79.8

0.67

0.9

77.9

36.6

Minor 5ss

37.1

-1.5

3.3

49.6

Minor BPS

54.6

0.23

1.9

73.13

42.8

Associated Gene:

Gene:

RCOR1

Ensembl Gene ID:

ENSAPLG00000012214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042431

53223831 - 53245006

21176

ENSAPLT00000012726

53208145 - 53245063

36919