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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53242707_53244964_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53242707 - 53244964
Intron Length:
2258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
STKMSEEEDEATSVLDVRYA
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85
0.79
0.7
76.7
32
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
RCOR1
Ensembl Gene ID:
ENSAPLG00000012214
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042431
53223831 - 53245006
21176
ENSAPLT00000012726
53208145 - 53245063
36919