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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53252618_53257261_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53252618 - 53257261
Intron Length:
4644

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCT|GCATGCAAA
5'SS Class:
weak_major
3'SS Sequence:
GTGCCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
CCTCCCTTCAGT
Flanking Amino Acid:
SVTHTRCLLSGRGTTPSPCP
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.5
51
41.4
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
72.3
0.5
1
62.2
43.4
Minor 5ss
37.4
-1.4
4
57.4
47
Minor BPS
50
0.08
2.1
68.68
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019480
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025393
53252531 - 53258373
5843