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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53302993_53303876_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

53302993 - 53303876

Intron Length:

884

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCG

5'SS Class:

major

3'SS Sequence:

CATTCCTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

GAGTGTTTAAAA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

64.1

39.3

Major BPS

73.1

0.58

79.6

29.1

Major PPT

0.67

0.8

73.6

30.9

Minor 5ss

28.1

-2.5

3.6

47.1

Minor BPS

49.6

-0

1.9

58.37

41.1

Associated Gene:

Gene:

TRAF3

Ensembl Gene ID:

ENSAPLG00000011933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022307

53302516 - 53366656

64141