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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53303237_53303876_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
53303237 - 53303876
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCCCC
5'SS Class:
weak_major
3'SS Sequence:
CATTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GAGTGTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.2
47.8
43
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
80
0.67
0.8
73.6
30.9
Minor 5ss
38.2
-1.3
3.2
51.8
44.9
Minor BPS
49.6
-0
1.9
58.37
41.1

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012446
53303145 - 53366656
63512