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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53303933_53318735_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53303933 - 53318735
Intron Length:
14803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
CCGACTTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
80.9
0.7
0.9
72.8
42.2
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
48.8
-0
1.7
59.32
45.1

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038265
53303877 - 53366279
62403
ENSAPLT00000023325
53303877 - 53366279
62403