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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53303933_53339059_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

53303933 - 53339059

Intron Length:

35127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

GTTTTCTTACTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.6

37.2

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

85.2

0.79

0.8

80.2

31.4

Minor 5ss

32.4

-2

3.4

46.7

48.6

Minor BPS

69.5

0.69

1.6

83.97

37.3

Associated Gene:

Gene:

TRAF3

Ensembl Gene ID:

ENSAPLG00000011933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022307

53302516 - 53366656

64141

ENSAPLT00000012446

53303145 - 53366656

63512