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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53339317_53342121_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53339317 - 53342121
Intron Length:
2805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTGAGTTAAAAT
Flanking Amino Acid:
FCETCMNALLSSSSPKCTAC
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
45.3
-0.2
2.1
65.31
45.3

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024164
53339075 - 53366279
27205
ENSAPLT00000023325
53303877 - 53366279
62403
ENSAPLT00000022307
53302516 - 53366656
64141
ENSAPLT00000012446
53303145 - 53366656
63512
ENSAPLT00000038265
53303877 - 53366279
62403