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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53342174_53344466_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53342174 - 53344466
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATCTTATTT
Flanking Amino Acid:
ACQESIVKDKVFKDNCCRRE
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
70.3
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
46.5
-0.4
3.1
64.4
47
Minor BPS
60.3
0.4
1.6
75.9
41.4

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023325
53303877 - 53366279
62403
ENSAPLT00000022307
53302516 - 53366656
64141
ENSAPLT00000012446
53303145 - 53366656
63512
ENSAPLT00000038265
53303877 - 53366279
62403
ENSAPLT00000024164
53339075 - 53366279
27205