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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53345652_53349757_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53345652 - 53349757
Intron Length:
4106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGTAT
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
ACAAGCTGATCT
Flanking Amino Acid:
KSQVPMIMLQKHEDTDCPCV
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.9
35.8
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
85.9
0.81
0.6
81.9
22.8
Minor 5ss
31.9
-2.1
3.5
46
49.3
Minor BPS
42.8
-0.4
2
56.98
45

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024164
53339075 - 53366279
27205
ENSAPLT00000023325
53303877 - 53366279
62403
ENSAPLT00000022307
53302516 - 53366656
64141
ENSAPLT00000012446
53303145 - 53366656
63512
ENSAPLT00000038265
53303877 - 53366279
62403