About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53349839_53352547_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53349839 - 53352547
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
TTTGCCAAAACT
Flanking Amino Acid:
CSVKTLMRSELNAHLSECIN
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
86.6
0.82
0.7
81.5
28.7
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
59.3
0.37
2.1
84.77
41.8

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038265
53303877 - 53366279
62403
ENSAPLT00000023325
53303877 - 53366279
62403
ENSAPLT00000022307
53302516 - 53366656
64141
ENSAPLT00000012446
53303145 - 53366656
63512