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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53352623_53354438_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53352623 - 53354438
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATTGGCTAAAAT
Flanking Amino Acid:
SFKRYGCTFQGTNQQIKAHE
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
81
0.7
0.9
75.8
38.1
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
47.7
-0.1
2.2
71.23
45.5

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023325
53303877 - 53366279
62403
ENSAPLT00000022307
53302516 - 53366656
64141
ENSAPLT00000012446
53303145 - 53366656
63512