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Intron Name: Anas_platyrhynchos_platyrhynchos_5_53352623_53359188_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53352623 - 53359188

Intron Length:

6566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTATA

5'SS Class:

strong_major

3'SS Sequence:

GAATTTTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

AATTGTAGAATT

Flanking Amino Acid:

SFKRYGCTFQVALLQNESLE

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

1.2

87.1

Major BPS

0.92

0.9

86.2

29.1

Major PPT

78.5

0.64

69.6

45.4

Minor 5ss

34.7

-1.7

2.7

42.8

Minor BPS

45.3

-0.2

65.37

39.3

Associated Gene:

Gene:

TRAF3

Ensembl Gene ID:

ENSAPLG00000011933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038265

53303877 - 53366279

62403