Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53354532_53359188_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53354532 - 53359188

Intron Length:

4657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATATCTT

5'SS Class:

major

3'SS Sequence:

GAATTTTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

AATTGTAGAATT

Flanking Amino Acid:

KEWSNALENKVALLQNESLE

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

76.8

38.2

Major BPS

0.92

0.9

86.2

29.1

Major PPT

78.5

0.64

69.6

45.4

Minor 5ss

45.6

-0.5

67.2

43.9

Minor BPS

45.3

-0.2

65.37

39.3

Associated Gene:

Gene:

TRAF3

Ensembl Gene ID:

ENSAPLG00000011933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022307

53302516 - 53366656

64141

ENSAPLT00000012446

53303145 - 53366656

63512

ENSAPLT00000023325

53303877 - 53366279

62403