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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53359330_53364311_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53359330 - 53364311
Intron Length:
4982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCATGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
NNESKILHLQRVIDSQAEKL
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.9
0.38
1.1
68.4
36.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
TRAF3
Ensembl Gene ID:
ENSAPLG00000011933
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022307
53302516 - 53366656
64141
ENSAPLT00000012446
53303145 - 53366656
63512
ENSAPLT00000038265
53303877 - 53366279
62403
ENSAPLT00000023325
53303877 - 53366279
62403