Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53394802_53396620_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53394802 - 53396620

Intron Length:

1819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGACA

5'SS Class:

strong_major

3'SS Sequence:

CGTCTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GTGACACCACGT

Flanking Amino Acid:

ILFLYRKGKLRPCPLHLHRL

Intron Amino Acid Position:

406

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

72.3

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

70.5

0.46

0.9

61.1

40.1

Minor 5ss

31.2

-2.2

3.3

40.2

45.7

Minor BPS

32.7

-1.2

2.1

47.84

43.9

Associated Gene:

Gene:

AMN

Ensembl Gene ID:

ENSAPLG00000011646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033744

53380513 - 53396981

16469

ENSAPLT00000012140

53380513 - 53396967

16455