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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53405266_53405357_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53405266 - 53405357
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
AGATGTAAAACT
Flanking Amino Acid:
SKTYISWPSSSGSDVGGAMP
Intron Amino Acid Position:
1661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
85.7
0.8
0.7
80.5
24.8
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
42.8
-0.4
2.2
60.75
42.8

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992
ENSAPLT00000041679
53402177 - 53494776
92600