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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53405467_53405595_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53405467 - 53405595
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTCATC
Flanking Amino Acid:
LFLRICGCSQSVLPAAQDEK
Intron Amino Acid Position:
1625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77
0.61
0.8
71.5
33.9
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
50.4
-0
1.9
68.44
37.4

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011055
53402785 - 53494776
91992