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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53410931_53414442_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53410931 - 53414442
Intron Length:
3512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATTGTTTTACT
Flanking Amino Acid:
GLYVIEVTRDVIVRAADCKK
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.3
37.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
40
-1.1
2.8
50
46.2
Minor BPS
58.6
0.35
2.1
80.69
41.1

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992
ENSAPLT00000041679
53402177 - 53494776
92600